Skip to content

Y

Yabuki, N., B. S. Leander, and J. D. Silberman. 2010. Ultrastructure and Molecular Phylogenetic Position of a Novel Phagotrophic Stramenopile from Low Oxygen Environments: Rictus lutensis gen. et sp. nov. (Bicosoecida, incertae). Protist. 161: 264-278. [C]

Yalden, D. W. 1985. Feedings mechanisms as evidence for cyclostome monophyly. Zoological Journal of the Linnean Society. 84: 291–300.

Yamada, K. and M. Hayashi. 2003, Studies on the bryophyte flora of Vanuatu. 8. Heteroscyphus (Geocalycaceae, Hepaticae): Bulletin of the National Science Museum, Series B, Botany. 29 149–152. 

Yamada, T., H. Tobe, R. Imaichi, and M. Kato. 2001. Developmental morphology of the ovules of Amborella trichopoda (Amborellaceae) and Chloranthus serratus (Chloranthaceae). Botanical Journal of the Linnean Society 137:277-290.

Yamada, T., R. Imaichi, and M. Kato. 2001. Developmental morphology of ovules and seeds of Nymphaeales. American Journal of Botany. 88:963-974.[L]

Yaman, M. and R. Radek. 2003. Nosema chaetocnemae sp. n. (Microspora: Nosematidae), a microsporidian parasite of Chaetocnema tibialis (Coleoptera: Chrysomelidae). Acta Protozoologica 42: 231-237. [C]

Yamanouchi, S. 1906 The life history of Polysiphonia violacea. Botanical Gazette. 42: 401-401.

Yamaoka, S., M. Takenaka, T. Hanajiri, Y. Shimizu-Ueda, H. Nishida, K. T. Yamoto, H. Fukuzawa, and K. Ohyama. 2004. A mutant with constitutive sexual organ development in Marchantia polymorpha L. Sexual Plant Reproduction. 16:253–257.

Yang, E. C., G. H. Boo, H. J. Kim, S. M. Cho, S. M. Boo, R. A. Andersen, and H. S. Yoon. 2012. Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles. Protist. 163: 217-231. [C]

Yang, H. W. Im, D. An, W. Park, I. Kim, and S. Lee. 2005. Silvimonas terrae gen. nov., sp. nov., a novel chitin-degrading facultative anaerobe belonging to the Betaproteobacteria. International Journal of Systematic and Evolutionary Microbiology.  55:2329-2332. [C, L]

Yang, Rui-Dong, Jia-Ren Mao, Wei-Hua Zhang, Li-Jun Jiang, and Hui Gao. 2004, Bryophyte-like fossil (Parafunaria sinensis) from Early-Middle Cambrian Kaili Formation in Guizhou Province, China: Acta Botanica Sinica. 46 180–185. [“The fossil of P. sinensis possesses typical characters of bryophyte, such as whorled leaves, capsule and seta, and complex rhizoid or foot. We infer that the bryophyte-like fossil could be the ancestor of bryophyte.”]. 

Yang, S., R. F. Doolittle, and P. E. Bourne. 2005. Phylogeny determined by protein domain content.  PNAS. 102(2):  373-378. [C, L]

Yang, W-F., Z-G. Yu, and V. Anh. 2016. Whole genome/proteome based phylogeny reconstruction for prokaryotes using higher order Markov model and chaos game representation. Molecular Phylogenetics and Evolution. 96:102-111.

Yang, Y., E. Yang, Z. An, and X. Liu. 2007. Evolution of nematode-trapping cells of predatory fungi of the Orbiliaceae based on evidence from rRNA-encoding DNA and multiprotein sequences. PNAS. 104(20):  8379-8384. [C,L]

Yang, Y., S. Maruyama, H. Sekimoto, H. Sakayama, and H. Nozaki.  2011.  An extending phylogenetic analysis reveals ancient origin of ‘non-green’ phosphoribulokinase genes from two lineages of ‘green’ secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta.  BMC Research Notes. 4(330): 1-10.

Yankura, K. A., M. L. Martik, C. K. Jennings, and V. F. Hinman. 2010. Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms. BMC Biology. 8: 143-152. [C]

Yaris, M., J. G, Caporaso, and R. Knight.  2005.  Origins of the genetic code: the escaped triplet theory.  Annual Review of Biochemistry.   74: 179-198.

Yarlett, N., C. G. Orpin, E. A. Munn, N. C. Yarlett, and C. A. Greenwood. 1986. Hydrogenosomes in the rumen fungus Neocallimastix patriciarum. Biochemistry Journal. 236: 729-739. [C]

Yaroshevich, E. N, and O. M Maslovskii. 2002, Inventarizatsiya briologicheskikh kollektsii CNG i Evropy s ispol’zovaniem komp’yuternoi sistemy Herbarium (vo. 4), pp. 71–72: In A. D. Potemkin (ed.), Problemy Briologii na Rubezhe Vekov. Russian Academy of Sciences, V. L. Komarov Botanical Institute, St. Petersburg, Russia.

Yarza, P., M. Richter, J. R. Peplies, J. Euzeby, R. Amann, H-H. Schleifer, W. Ludwig, F. O. Glöckner, and R. Rosello-Mora. 2008. The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Systematic and Applied Microbiology. 31: 241-250. [C]

Yarza, P., W. Ludwig, J. Euzeby, R. Amann, H-H. Schleifer, F. O. Glöckner, and R. Rosello-Mora. 2010. Update of the all-species living tree project based on 16S and 23S rRNA sequence analyses. Systematic and Applied Microbiology. 33: 291-299. [C]

Yasui, K., M. Urata, N. Yamaguchi, H. ueda, and Y. Henmi. 2007. Laboratory culture of the oriental lancelet Brachiostoma belcheri. Zoological Science. 24: 514-520. [C]

Yates, A. M. 2003The species taxonomy of the sauropodomorph dinosaurs from the Löwenstein Formation (Norian, Late Triassic) of Germany. Palaeontology.46: 317–337.

Yates, M. V. and S.R. Yates. 1988. Modeling microbial fate in the subsurface environment. CRC Critical Reviews in Environmental Control. 17:307-344. (VIRUS SECTIONS ONLY).

Yatsentyuk, S. P, N. A Konstantinova, M. S Ignatov, J Hyvönen, and A. V Troitsky. 2004, On phylogeny of Lophoziaceae and related families (Hepaticae, Jungermanniales) based on trnL-trnF intron-spacer sequences of chloroplast DNA: Monographs in Systematic Botany from the Missouri Botanical Garden. 98 150–167. 

Yatskievych, G. 2007. A new combination in Glossopetalon. Botanical Garden Journal. 17: 529-530. [C]

Ybazeta, G. and F. Santini. 2004. Patterns and processes in the evolution of fishes: an introduction to the symposium. Integrative and Comparative Biology. 44:331-332. [C]

Yevdakova, N, and K von Schwartzenberg. 2004, [Abstract] Studies of cytokinin biosynthetic genes from Physcomitrella, p. 38: In R. Reski (org.), Abstract Book: Moss 2004, The 7th Annual Moss International Conference. Plant Biotechnology, University of Freiburg, Freiburg, Germany.

Yi, Z., W. Song, C. Shao, A. Warren, K. A. S. Al-Rasheid, D. McL. Roberts, M. Miao, S. A. Al-Quraishy, Z. Chen. 2008. Phylogeny of some systematically uncertain urostyloids – Apokeronopsis, Metaurostylopsis, Thigmokeronopsis (Ciliophora, Stichotrichia) estimated with small subunit rRNA gene sequence information: Discrepancies and agreements with morphological data. European Journal of Protistology. 44: 254-262. 

Yih, W. and D.W. Coats. 2000. Infection of Gymnodinium sanguineum by the dinoflagellate Amoebophrya sp.:  Effect of nutrient environment on parasite generation time, reproduction and infectivity. J. Eukaryot. Microbiol. 47(5):  504-510. [C,L]

Yip, K. L. 2004, A revision of the genus Cleistocarpidium (Ditrichaceae, Musci): Journal of the Hattori Botanical Laboratory. 96 211–222. 2 figs., 1 tab. [New: Cleistocarpidium japonicum (Deguchi, Matsui & Iwatsuki) comb. nov.]. 

Yoder, A. D., J. A. Irwin, and B. A. Payseur. 2001. Failure of the ILD to determine data combinability for slow loris phylogeny. Systematic Biology. 50: 408-424.

Yokobori, S., T. Iseto, S. Asakawa, T. Sasaki, N. Shimizu, A. yamagishi, T. Oshima, E. Hirose. 2008. Complete nucleotide sequences of mitochondrial genomes of two solitary entoprocts, Loxocorone allax and Loxosomella aloxiatai: Implications for lophotrochozoan phylogeny. Molecular Phylogenetics and Evolution. 47: 612-628. [C]

Yoon, H. S., J. Grant, Y. I. Tekle, M. Wu, B. C. Chaon, J. C. Cole, J. M. Logsdon, D. J. Patterson, D. Bhattacharya, and L. A. Katz. 2008. Broadly sampled multigene trees of eukaryotes. BMC evolutionary Biology. 8: 14-25. [C]

Yoon, H. S,. J. D. Hackett, and D. Bhattacharya. 2002a. A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proceedings of the National Academy of Sciences, USA. 99(18): 11724-11729. [C,L]

Yoon, H.S., J.D. Hackett, F.M. Van Dolah, T. Nosenko, K.L. Lidie, D. Bhattacharya. 2005. Tertiary endosymbiosis driven genome evolution in dinoflagellate algae. Molecular Biology and Evolution. 22(5): 1299-1308. [C]

Yoon, H. S., J. Hackett, C. Ciniglia, G. Pinto, and D. Bhattacharya. 2004. A molecular timeline for the origin of photosynthetic eukaryotes. Molecular Biology and Evolution. 21: 21 (5): 809-818. [C,L] 

Yoon, H. S., J. D. Hackett, G. Pinto, and D. Bhattacharya. 2002b. The single, ancient origin of chromist plastids. Proceedings of the National Academy of Sciences (USA). 99: 15507-15507. [C,L]

Yoshida, M., M.-H. Noel, T. Nakayama, T. Naganuma, and I. Inouye. 2006. A haptophyte bearing siliceous scales: ultrastructure and phylogenetic position of Hyalolithus neolepis gen. et sp. nov. (Prymnesiophyceae, Haptophyta). Protist 157: 213-234. [C]

Yotova, V., J-F. Lefebvre, C. Moreau, E. Gbeha, K. Hovhannesyan, S. Bourgeois, S. Bedarida, L. Azevedo, A. Amorim, T. Sarkisian, P. H. Avogbe, N. Chabi, M. H. Dicko, E. S. K. S. Amouszous, A. Sanni, J. Roberts-Thomson, B. Boettcher, R. J. Scott, and D. Labuda.  2011. An x-linked haplotype of neandertal origin is present among all non-African populations.  Molecular Biology and Evolution.  28(7): 1957-1962.

Young, G. C. 1979. New information on the structure and relationships of Buchanosteus (Placodermi: Euarthrodira) from the Early Devonian of New South Wales. Zoological Journal of the Linnean Society. 66:309-352.

Young, G. C. 1980. A new Early Devonian placoderm from New South Wales, Australia, with a discussion of placoderm phylogeny. Palaeontographica A. 167:10-76.

Young, G. C. 1984. Reconstruction of the jaws and braincase in the Devonian placoderm fish Bothriolepis. Palaeontology. 27:635-661.

Young, G. C. 1986. The relationships of placoderm fishes. Zoological Journal of the Linnean Society. 88:1-57.

Young, G. C. 1991. The first armoured agnathan vertebrates from the Devonian of Australia. In: M. M. Chang, Y.-H. Liu, and G.-R. Zhang, eds.  Early Vertebrates and Related Problems of Evolutionary Biology. Science Press. Beijing. pp 67–86.

Young, G. C. 1993. Vertebrate faunal provinces in the Middle Palaeozoic. In: J. A. Long, ed. Palaeozoic Vertebrate Biostratigraphy and Biogeography. Belhaven Press. pp. 293-323.

Young, G. C. 2008. Number and arrangement of extraocular muscles in primitive gnathostomes: evidence from extinct placoderm fishes. Biology Letters. 4: 110-114. [C]

Young, G. C., H. Lelievre, and D. Goujet. 2001. Primitive jaw structure in an articulated brachythoracid arthrodire (placoderm fish; early Devonian) from Southeastern Australia. Journal of Vertebrate Paleontology 21(4): 670-678. [C]

Young, G. C. 2003. Did placoderm fish have teeth? Journal of Vertebrate Paleontology 23(4): 987-990. [C]

Young, G. C. 2008. The relationships of antiarch (Devonian placoderm fishes)—evidence supporting placoderm monophyly. Journal of Vertebrate Paleontology. 28:626-626. [C]

Young, G. C., V. N. Karatajute-Talimaa, and M. M. Smith. 1996. A possible Late Cambrian vertebrate from Australia. Nature. 383: 810-812. 

Young, J. 2003. Culture collections as the engine of multidisciplinary research on protists—the Coccolithophores tale: Symposium Presentation. Meeting, Society of Protozoologists, Gleneden Beach, Oregon. June 14–19, 2003.

Young, J. Z. 1977. Brain anatomy [book review]. Nature. 266. 792-793. [C]

Youngquist, W. L. 1945. Upper Devonian conodonts from the Independence Shale (?) of Iowa. Journal of Paleontology. 19: 355–367.

Youngquist, W. L. and A. K. Miller. 1949. Conodonts from the late Mississippian Pella Beds of south-central Iowa. Journal of Paleontology. 23: 617–622.

Yu, L. and Y. Zhang. 2006. Phylogeny of the caniform carnivora: evidence from multiple genes. Genetica 127: 65-79. 

Yu, X. 1998. A new porolepiform-like fish, Psarolepis romeri, gen. et sp. no. (Sarcopterygii, Osteichthyes) from the Lower Devonian of Yunnan, China. Journal of Vertebrate Paleontology. 18:261-274.

Yuan, C. L., P. J. Keeling, P. J. Krause, A. Horak, S. Bent, L. Rollend, and X. G. Hua.  2012.  Colpodella spp.- like parasite infection in woman, China.  Emerging Infectious Diseases.  18(1): 125-127.

Yuasa, T. O. Takahashi, D. Honda, S. Mayama. 2005. Phylogenetic analyses of the polycystine Radiolaria based on the 18S rDNA sequences of the Spumellarida and Nassellarida. European Journal of Protistology. 41: 287-298.

Yubuki, N., B. S. Leander, and J. D. Silberman. 2010. Untrastructural and molecular phylogenetic position of a novel phagotrophic stramenopile from low oxygen environments: Rictus lutensis gen. et sp. nov. (Bicosoecida, incertae sedis). Protist. 161: 264-278. [C]

Yukawa, T., H. Ohba, K. M. Cameron, and M. W. Chase. 1996. Chloroplast DNA phylogeny of subtribe Dendrobiinae (Orchidaceae): Insights from a combined analysis based on rbcL sequences and restriction site variation. J. Plant Res. 109:169-176.


By Jack R. Holt.  Last revised: 02/12/2016

Print Friendly, PDF & Email
Skip to toolbar